YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38105741, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSMSGTPS PQPDITRDRL PTLFEVLSRR TSPPVDLFSF YIYMRDQQRS VDYLDFWLDV  60
   61 AQHMTLCRHY VRELRRSVLV GTPDGEKMSK RSSGILESMG GLDHGAGPSR FGHNTEKTRD 120
  121 QDAQMSAFLR DEASHGIHDS PQSSQSRNAR PSGSTPRDLT TDSNSPMHAV AREDIRASAE 180
  181 KILYTFLLPG AEREIVLPGS ITQDVTTAIE EFGRDDPEGF DVAKDYVFQA MERDAFPGFL 240
  241 RMKALGNLIP PTLIMRLILG MVSMFGGFWA AFVLIFLNTP WQVRLWYSLD PILALLGFSE 300
  301 YTPFNFSRVR EPYVRKLLAK RSIMVLATTI LVDAALLALF IAVPGKRL

Type	Start	End	Confidence
Cytoplasmic	1	252	0.95
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	284	0.78
Transmembrane Helix	285	304	0.84
Cytoplasmic	305	322	0.83
Transmembrane Helix	323	343	0.95
Non-Cytoplasmic	344	348	0.82