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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39943060, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVILFLFV GAEVTHTTQG QHAVVAQAEV VSGGGDGGQS ASAREPGADL VDAAVHELRK  60
   61 IQGPAHYHRK KRPGFFGLIA RQVLGALPTF RLTAPTPSSS SRAPTGQLAD AIKLLEESAG 120
  121 KNNSDALYLL AEMSFYGNFS HPIDLPRSYN YYQRLADNTG NSSAMYMIGL MYSTGVGRAV 180
  181 EPDQAKALLY YTFAALQGHT RAEMAVGARH SAGIGTPKNC EQACKFYKRV ADKAVAWYRS 240
  241 GPPGGMSWSV ESHRISDDFG GVYGEGASVS SAGINGINAR SQFNEHASIG DIIEYLDLMV 300
  301 HKGDFQASFN LGRIYYEGQR GLDRDLVAAR RYFRKVVNKY WVKGGGIVDN APSQLEVAAG 360
  361 KAAGYLGRMY LRGDGVDQDF ERARFWFNRG IKLGEAQSQF GLGMMLLHGY GQAKNLARAT 420
  421 DLLKAAAGQN HASANVQLGA LYLDQGGPED IRAANDCFEQ AARYGNIEAQ YYLAEMISHG 480
  481 VGRDRSCSQA LSFYRSVAEK AEPVVSSWLN ANHAYEDGDY EAAFLQYLGT AEQGYERAQN 540
  541 NVAFLLDTQK SLLPLPDWLM RKSPTPKLLQ DPSLGLIYWT RSSRQGNIDS LVKMGDYYLQ 600
  601 GTGTDPDVDK AVQCYQGAAD YHQSAQALYN LGWMHEHGIG LDQDYHLAKR YYDEALMTND 660
  661 EAYLPVTLAL FKLRAKSAWN TLTNGGINSI QDEPVQGKDW SWGEWVANFL REDYFFEEDA 720
  721 HFDDNFDHTM PGGDAALPAE LEEGLVETLI ILGLAAALAF LVYYRQHRQQ QHREENARRL 780
  781 GAAIQQQALQ QQAGVMGGAA AAGGHVQADD TGVFPRPDDP EFRQFYAGSW WIKTMNTPAA 840
  841 KRRRIEATKT LRKPFRSPLI SRRGGDKDEA KTGSEKEGEE GQSSADNRTN TTATPSPLRT 900
  901 KVPRRAVDTR TPFKSPSVAV ASSSSSFSAA SGLEGKNPRP NPDPTPDGTR KAGPSSQVAA 960
  961 GAVVRPSDEQ LKRANGDAAG AAADGDNELR HLIVKWKAAS RLAAEMVFDI AKQRVDSAGG1020
 1021 PKAWRQQQKS WDDPASGTRG SDDEEGRELG GENHYDHDGS SCDNNGRVSD DEHEPAEQKG1080
 1081 TRLPFFFAAL VGWIMVSLDS ATAHGSVWVP GRCLKRFAIL RARLQWQELW ARPLSCGING1140
 1141 TPYPGWY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle