YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145009887, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRTSSLAT VGSDTRDSAS DKPGYDKQKK LLSADVGHFS LVRALHMADY ITALNGLCGI  60
   61 MSIFSSMRYC LGDPSDKSNA YAALAFLPFG LFFDFMDGKV ARWRKKTSLM GAQLDSLADL 120
  121 ISFGVAPAVV AFAIGMRTPL DHLGLAFYVL CGLTRLARFN VTTDDIPKDA TGKAAYFEGT 180
  181 PIPTSLALDG LMAYWVRSGA IHDAIPGGLW LAGTQFEFHP IIAVFILHGC CMTSKTIHIP 240
  241 KP

Type	Start	End	Confidence
Cytoplasmic	1	49	0.95
Transmembrane Helix	50	71	0.88
Non-Cytoplasmic	72	79	0.83
Transmembrane Helix	80	96	0.96
Cytoplasmic	97	115	0.84
Transmembrane Helix	116	136	0.91
Non-Cytoplasmic	137	215	0.59
Transmembrane Helix	216	237	0.80
Cytoplasmic	238	242	0.79