YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38105509, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	41	0.91
Non-Cytoplasmic	42	251	0.94
Transmembrane Helix	252	270	0.53
Cytoplasmic	271	286	0.57
Transmembrane Helix	287	307	0.51
Non-Cytoplasmic	308	357	0.92
Transmembrane Helix	358	381	0.79
Cytoplasmic	382	419	0.86
Transmembrane Helix	420	441	0.92
Non-Cytoplasmic	442	447	0.74
Transmembrane Helix	448	471	0.81
Cytoplasmic	472	486	0.72
Transmembrane Helix	487	514	0.85
Non-Cytoplasmic	515	531	0.62
Transmembrane Helix	532	554	0.88
Cytoplasmic	555	565	0.54
Transmembrane Helix	566	589	0.78
Non-Cytoplasmic	590	606	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLLSTVLS LRRDPRILKL PPYLSVLCIV VGIVSLLLLP LDNFTRRTYI SENALLPGQV  60
   61 HTYFAGSDQN VFRAYKHEVN SLVDKSNVEI NDKLESIFKG VGLKVGRQNF TYSSSGIQHS 120
  121 GENVYAILQA PRGDATEAIV LVTAWRNPNG ELNRNGVALA LTLARYFRRW SLWSKDIIFL 180
  181 LPPDSLAGPQ AWVDAYHDAH DPRKVAALPL KSGALQGALA LDYTREDRYE SVHLVYDGVN 240
  241 GQLPNLDLFN SLVHVAGGQM GIGVSIQDMW HHRNDYRDRL QTMLRGMLRQ GIGAGTGAHS 300
  301 CFMPYHVDAV TLVPYGDGWQ DEMALGRVVE GTFRSLNNLL EHLHQSFFFY LLMHKEHFVS 360
  361 IGTYLPSAML LGANFTIMSI LMWFKSGQPE EEEEPEGQEA ATNSGASVTS ESRPVVEREL 420
  421 LVPLSVIGTC LFLGAVPLYM FNHLPAGLLY PSFIAFSAIN IFLPPIASQL LETLYWPTTQ 480
  481 QYQLIKCFYL LVLGMFISSL AILNFSLAFW IGLIATPLTF TRPFPASPAL RWAYVALLNI 540
  541 ASPPAVFAVA CAAWRLDVAE VLQAAAFGWD VWGMYTAVVV WCVWWPAWLA GSLVVLGRPA 600
  601 TKVKTA