YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39942794, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGYERVNA HDEEDHNSPI QPGRIPNSPP PSFRSRESSI FGRDRNDARQ KDVDTTLADA  60
   61 FDSADDSDDD VDDTQRLVRA TPGTSQASTS AAPSSSSSQV GVSSTATRNA AAPGGQSATA 120
  121 QPPAPASGAA ATPFRVYGAG MQSDGVFSNL SAKPERGEEK EEQPPTYEQA AADAAPPYWE 180
  181 TTIMAPGFGG ADEVYIDGMP VGSFFSFVWN GMITITFQPL IGFLLTYLLH STHAAKNGSR 240
  241 GGLGITLIQY GFQFKATTGA GAGSMHTSGS SEPENYAEPP DPNAHDFDPN AVQQGGAGTG 300
  301 GSDISGSDWL AYVLMIVGWF ILIRSLSDYI RARRHEQLVL QSPDRGLGVA IVAEGETPDR 360
  361 AV

Type	Start	End	Confidence
Cytoplasmic	1	206	0.52
Transmembrane Helix	207	229	0.85
Non-Cytoplasmic	230	308	0.74
Transmembrane Helix	309	326	0.93
Cytoplasmic	327	362	0.96