YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39942638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	76	0.93
Non-Cytoplasmic	77	87	0.85
Transmembrane Helix	88	108	0.95
Cytoplasmic	109	127	0.93
Transmembrane Helix	128	151	0.92
Non-Cytoplasmic	152	158	0.88
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	188	0.84
Transmembrane Helix	189	213	0.87
Non-Cytoplasmic	214	225	0.86
Transmembrane Helix	226	249	0.88
Cytoplasmic	250	260	0.97
Transmembrane Helix	261	284	0.86
Non-Cytoplasmic	285	295	0.82
Transmembrane Helix	296	318	0.87
Cytoplasmic	319	328	0.78
Transmembrane Helix	329	351	0.83
Non-Cytoplasmic	352	357	0.86
Transmembrane Helix	358	379	0.89
Cytoplasmic	380	389	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINKESDNA AYMATTSTAP REDIEPQLPN DRAATPDDNA TGQRISAFKS LGWLDRYLAV  60
   61 WCFLAMVLGV LLGNFVPETG PALQRGKFVG VSVAIAIGLL VMMYPILCKV RYESLHKLFA 120
  121 HRGVWKQIGF SVVVNWIIAP LLMLALAWAF LPDKSELRSG LIMVGLGRCI AMVLIWTNLA 180
  181 GGDEEYCAIL VAVNSVLQMV LFAPLAVLFI GVISGENQGL EAKYTVVATS VAVFLGIPFG 240
  241 AAVITRFAIR ATLGPEWFEK VFLRFISPWS LIGLLYTIVV LFASQGRQVV HQIVSVVRVA 300
  301 APLTVYFFVI FFATLLVARR LRFGYALATT QSLTAASNNF ELAIAVAVAT YGPESDEALA 360
  361 ATVGPLIEVP VLLALVYAVK YLGRRWTWK