YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39942526, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSIAAYHS SRRRSSAWAA AVSVAGNVVT NAISRATKTD LGIDPLRIVA KEMKFLTGNI  60
   61 RKLLGSGHPS LDRVAKYYTQ AEGKHVRPLI VLLMSRATSL CPKAPRQQYI QSAAGIDTSI 120
  121 SPIGILGDAN PSSSIQALDN QSDLSSHSDP DILPSQRRLA EITELIHTAS LLHDDVIDHS 180
  181 ESRRGSPSAN LEFGNKMAVL GGDFLLGRAS VALARLRDAE VTELLATVIA NLVEGEFMQL 240
  241 KNTSRDESRP VWSEDALTYY LQKTYLKTAS LISKSCRASA LLGGADAQTV DAAYAFGKNL 300
  301 GLAFQLVDDM LDYTVSAVDL GKPAGADLEL GLATAPLLFA WKNHPELGEL VGRKFSKEGD 360
  361 VARAREIVLA SDGIEQTRAL AQRYAEQAIE AISHFPDSEA KDGLIEMAAK TLKRKK

Type	Start	End	Confidence
Signal Peptide	1	32	0.92
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	416	0.99