YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38105140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPTRLNIPP VTRILLIGLV VQSLLGAAIR YRQWSAESDI VIPYLNLVPQ LSLVYPWTFV  60
   61 TTTLVESNLI TLALAGVTIY HGGRYLERAW SSREFAKFLL VCSLIPNFLC FAIMFIFFVL 120
  121 TRNERWTLTT IGGSVPLQIS FLVAFSQLVP AHTVTLFRGI VSLRVPRFPL LYIGVITALS 180
  181 LTPLLSSTPF FLGSFGLLTS WTYLRFYKTA FPDLDSSQPS SLRGDASETF AFAEFFPTPA 240
  241 KPLVAAISAQ VFSVLVAMRI CVPFSQADMM SAASRGSGGG DGAYLQRGVP GTARAEAERR 300
  301 RAIALKALDQ RLHAATANAA SRAAPVDGAA GPSAHVPPPA QTSGPTVSNQ PRAVAQAAMI 360
  361 SHAEDNGGME TTYTPEREIS GKSES

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	31	0.88
Non-Cytoplasmic	32	56	0.87
Transmembrane Helix	57	80	0.85
Cytoplasmic	81	97	0.85
Transmembrane Helix	98	120	0.94
Non-Cytoplasmic	121	136	0.77
Transmembrane Helix	137	157	0.83
Cytoplasmic	158	169	0.79
Transmembrane Helix	170	192	0.92
Non-Cytoplasmic	193	241	0.94
Transmembrane Helix	242	262	0.86
Cytoplasmic	263	385	0.92