YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38105054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	294	0.66
Transmembrane Helix	295	320	0.70
Non-Cytoplasmic	321	332	0.45
Transmembrane Helix	333	357	0.50
Cytoplasmic	358	376	0.83
Transmembrane Helix	377	395	0.95
Non-Cytoplasmic	396	411	0.71
Transmembrane Helix	412	428	0.91
Cytoplasmic	429	439	0.73
Transmembrane Helix	440	463	0.86
Non-Cytoplasmic	464	473	0.71
Transmembrane Helix	474	495	0.92
Cytoplasmic	496	515	0.85
Transmembrane Helix	516	538	0.84
Non-Cytoplasmic	539	547	0.69
Transmembrane Helix	548	571	0.67
Cytoplasmic	572	593	0.60
Transmembrane Helix	594	613	0.94
Non-Cytoplasmic	614	633	0.67
Transmembrane Helix	634	655	0.81
Cytoplasmic	656	665	0.62
Transmembrane Helix	666	687	0.87
Non-Cytoplasmic	688	693	0.59
Transmembrane Helix	694	714	0.91
Cytoplasmic	715	742	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTRNDSLN PENEQDDRRT SILSMFSFRE RHGSILSGIT DIIPENLPLP SSFVPTAPIV  60
   61 QEILSRDIAE CSDEDHDNED GDDNHVHEHR SGSISHSQTP PLDIGAGPSH HHHTQTTSQD 120
  121 AKLAFHPNGV AYGLSGFSAV SIQGVDRPVP NPQELQQSLA AEVDLLRDND LIPSHSSEQR 180
  181 RRSSATFSGR VYRRFLSTRV RDHDRPVDIF SSDVFRSSSQ SVLPDERAPL LPGRRRPSTD 240
  241 TEETLGESDG DSEAVSDSED ESVPTPPADE VHQKWDSAVA AQVLRTTWQR EAKTLVQYSA 300
  301 PLIVTFLLHY SVTVASVLTV GRLGMVELAA VNLATMTASI TCYVPVQGLA TCLDTLCAQA 360
  361 YGSGHKHLVG LQAQRMTWFL WILMVPIAVL WWFSGPIIEK LVPGEETAGL SSLYLRVLIL 420
  421 GMPGVAALES GKRFVQAQGL FHATTYVLLI TAPLSFFLNW LFVFRFGWGF AGSASAMAIV 480
  481 QNLIPILLVL YVVFFEGREC WSGFSWKAFR NWGPMIKLAL PGMIMIEAQF SVLEILTIAA 540
  541 GQLGTAHLAA QSVLVTVTST SFNIPFPLAI ATSTRVANLI GANLGDAART TTKVAIFAAL 600
  601 AVGVFNMIML ISLRRVLPAV FTDDERVIDI ASKTMIVCGI MQIFDALAAV SHGILRGVGR 660
  661 QAVGGYANLF SYYFVALPVS LSTAFALGWK LSGLWAGLVS GLAVVSALEL LYLYNSDWES 720
  721 AIAQAAARMR SEEVEIVEPK AS