YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38104993, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.92
Transmembrane Helix	53	72	0.59
Non-Cytoplasmic	73	93	0.65
Transmembrane Helix	94	112	0.69
Cytoplasmic	113	120	0.90
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	148	0.71
Transmembrane Helix	149	171	0.91
Cytoplasmic	172	179	0.96
Transmembrane Helix	180	201	0.93
Non-Cytoplasmic	202	211	0.81
Transmembrane Helix	212	233	0.94
Cytoplasmic	234	280	0.96
Transmembrane Helix	281	301	0.84
Non-Cytoplasmic	302	315	0.80
Transmembrane Helix	316	338	0.91
Cytoplasmic	339	345	0.79
Transmembrane Helix	346	365	0.94
Non-Cytoplasmic	366	375	0.80
Transmembrane Helix	376	396	0.84
Cytoplasmic	397	405	0.74
Transmembrane Helix	406	427	0.91
Non-Cytoplasmic	428	437	0.79
Transmembrane Helix	438	460	0.92
Cytoplasmic	461	591	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKEQTIVD PKHNGGNVSV SDGDAALQFL NNGTATVMTE ADEKRLLRKI DRTIMPLMFA  60
   61 CYFLQYLDKT LINYANVMGL QKDTGINTDQ YSQLALIFYV SYLVFEFPTG YLMQRLPTSK 120
  121 YLGFNVCAWG MMVACTAAAN SWAGLVTLRV LLGCFEAVVA PSLILITTMW YRKSEQPPRV 180
  181 GLWYVGTGIG KMVGALTSFG FQHYTGNVMR SWQIMFLVFG LITVAVGILV VLFMPDSPMK 240
  241 SRLTQEEKVW AIERLRGNKT GVENKHLKKY QVYECFRDPQ TFLLVLIVLS SNIPNGFISS 300
  301 YQASVIQSFG FTSKQAALLS IPSGAVACFA TITGTWFAGR FNLRGPFILA TLGMGFLGSN 360
  361 LMAFLPEDGY VVGKMIGNYS ANFIGSSLPL MYSYAGANYA GHTKKVTMNA IVLISFCLGN 420
  421 IIGPLTFREQ DKPRFIPAKI AMVVTTAFAA LLTVVLMLYY RWENKRRDQK YAHEAHRENS 480
  481 EFFDLTDREN HEFRFVTYHL PAMGVRSHTV SDAAAASNIS GLPPRKKQTK LASIFKRISP 540
  541 SKNVYPANIQ QAYSSLESVD TIDEIKDGQQ RRRSAGKFPS YHTYSVHARG Q