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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38104364, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSFSSLLT LCALASIPTA NAFDFKPAPE ANLDLSQLGR VGLAGDFSGL SLYQYEGQSE  60
   61 SQFNANGSES LLARAPNGAL ATVVGTDASI NAMCAYVLSN GDLAGVVLGG NFTSIGTQKS 120
  121 PAIAIFNPNT SEATPLPGLE GRVDAVLCDQ ESSTIYVGGT FRGNSSTNAI TWKNNQWTDL 180
  181 PFGGFNGQVR SISKASNGHI IFGGEFTGLG NGSLPSHPDG QAINIDKSTI TAGSSSSTNG 240
  241 FSDPRNIVCK APGATGAGNT WLLQDNTPGF WQASFKFGFQ PTKLRLRNTH QDGRGTRTWR 300
  301 FTAQPINGIM NFTYIDPATG RNASCTSECP LSDDTNLPFQ DFHFVNVIGM NGFRIDISQF 360
  361 YGSGGGLDGI ELFQDDIFTY AINDFNEPSC AGATKPASVT ATGPFSVSAS LQSQSQYLSA 420
  421 RIASPVTSDS ASVVFSPDIR SSGDFSVNMY TPGCIPDNTC DTRGQVNVTI NPRPGVTQSV 480
  481 QLFQTNNFEK YDQIFFGQMQ TTGSFRPTIT MTPLNGQSLD TMTFVAQRVG FVQVNSTGGL 540
  541 NGLFDWNPTK TTIDANEFES SPFHKLGSSL GPSTTVVALA AAGDVTFVGG SFKGDGAQNI 600
  601 VGVSSGNNAG AQSLSGGLNG PVATMALTGT KLYVGGSFSA TQDNSVNNLD NVAVLDTATR 660
  661 TWTALGGGVE GNVRNAVLMT MNITEASDET VVAFSGSFRQ LRSFDGNPAV PVNGFAVWVP 720
  721 SKRNWLNNLD GVEAIDGLLS SSILDVPGDG NFYAGTVSSA SLSAHGAATL FGNSVGRFPA 780
  781 KIQSSAASSS TSNLSKRDSS LNSGSSGVNA GAFYGNDGRN MTVLAGHFTA TATDGNTVHN 840
  841 IVIVDGGDKD TVTGLSQLSD NSTFRAVAVQ GDTLFAGGNV TGNVNGVTVS GLISYNLASK 900
  901 TYNTQPPALS GGNSTVQTIV ARPESSDVYV GGSFTLAGSL GCPGVCYYSA SSGVWNRPGS 960
  961 NLEGSVHSLL WTSNSVLVAG GNMTVNDTIK TNLARYNTGS SSWDAFPGAD QLPGPVEVLT1020
 1021 PASRDGDQIW ASGTSTTNGL VYIMKYDGSK WIEAPPLGPG SVVRSLQVFT LTSDHDGTDI1080
 1081 VLSNQALMLT GSIRIPNFGS ASAALFDGTS YQAYALTTSS DRTPGSISRV FVEKSQFFTS1140
 1141 SEGGRLPLVA IVLIGLGISL VLMLLIVLAG LFMDRLRKKR EGYVPAPTSM YDRGSGIQRI1200
 1201 PPGELLSSLN QGRPGAPTI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle