YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145021398, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPTGPLNL DVEAISGICG SISIACWVVV FSPQIVENFR RGSADGLSLQ FIIIWLLGDV  60
   61 FNILGGVMQG VLPTMIILAI YYTIADVVLL GQCFYYRGFT WRDEVVPSST QTPKPADGGV 120
  121 SNGNGSNHHG QQPNERTALL ANGSSTGQQG ASSRRGSWSD QSYHLSPAVP LIDDAVLARD 180
  181 ALAASVASPS ATRGAPDNRP SRLQAVAFNS LAVLMVCASG VAGWYLSRSR SDREAPSKGE 240
  241 DLLEFNILGQ VFGWLCAVLY LGSRVPQILL NYRRKSTEGV SMLFFLFACL GNLTYVLSIF 300
  301 AFEPRCRDKH SGIGPHAGGC VGGEAGRIYG QYILVNLSWL AGSLGTLLLD MGIFVQFFIY 360
  361 NKDDGEEFFA DCDAEGSRRA YSPSTVAIEE DDDEESIDGD RWDPRPLLER SVSNSPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.82
Transmembrane Helix	14	31	0.95
Cytoplasmic	32	46	0.74
Transmembrane Helix	47	68	0.85
Non-Cytoplasmic	69	74	0.63
Transmembrane Helix	75	96	0.85
Cytoplasmic	97	204	0.93
Transmembrane Helix	205	226	0.93
Non-Cytoplasmic	227	244	0.85
Transmembrane Helix	245	263	0.88
Cytoplasmic	264	279	0.75
Transmembrane Helix	280	302	0.89
Non-Cytoplasmic	303	336	0.82
Transmembrane Helix	337	360	0.74
Cytoplasmic	361	417	0.81