YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38104333, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSPSELCT SQLNRASPSP ISANEDDYSS AQASGREGSD DVRPRRRRRH SSYFPQRRKS  60
   61 IVNHIMDGEE HILLKVDLFL TELERRLDFL ESYGEISLDA SIARAYNTLQ AVRTGCSHVS 120
  121 EEVIGAGRRR VHIMVETLEA RYQDALAAAD SLHEKACVGI DLLDTMLSDF EDHASKFRER 180
  181 SLANAADAAG AFMGEGRRVV DEGIGRAREV VDEGFAAAKW AAESLEDHIQ RAVARAGKHG 240
  241 LIRYEDLPMP WRTNPHILKG YRFSETKLAC IKSGMFGISN ELVNIWSHAL GLVLVLAVAF 300
  301 YFYPTSPNFS LSTKTDVFIA AVFFFAACQC LVCSTIWHTM NSIADAHLIS SLACVDYTGI 360
  361 SMLIAASIMT TEYTAFYCDP VSRWIYMSLT AILGIGGVIL PWHPRFNGAD MAWARVAFYV 420
  421 SLGATGFLPI LQLSLTRGAD YVYEFYTPIA ESIAVYVFGA LIYASKIPER WYPGCFDYFG 480
  481 GSHNLWHLAV LGGIVFHYIA MQEFFSTAFK HAEAGCGAY

Type	Start	End	Confidence
Cytoplasmic	1	281	0.79
Transmembrane Helix	282	303	0.91
Non-Cytoplasmic	304	316	0.72
Transmembrane Helix	317	339	0.92
Cytoplasmic	340	347	0.69
Transmembrane Helix	348	370	0.83
Non-Cytoplasmic	371	383	0.62
Transmembrane Helix	384	403	0.95
Cytoplasmic	404	411	0.69
Transmembrane Helix	412	435	0.86
Non-Cytoplasmic	436	444	0.67
Transmembrane Helix	445	465	0.85
Cytoplasmic	466	482	0.61
Transmembrane Helix	483	501	0.91
Non-Cytoplasmic	502	519	0.68