YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38104289, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.94
Transmembrane Helix	87	108	0.88
Non-Cytoplasmic	109	117	0.66
Transmembrane Helix	118	135	0.76
Cytoplasmic	136	139	0.67
Transmembrane Helix	140	159	0.84
Non-Cytoplasmic	160	167	0.60
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	196	0.56
Transmembrane Helix	197	219	0.83
Non-Cytoplasmic	220	249	0.63
Transmembrane Helix	250	270	0.77
Cytoplasmic	271	281	0.64
Transmembrane Helix	282	305	0.86
Non-Cytoplasmic	306	336	0.68
Transmembrane Helix	337	359	0.69
Cytoplasmic	360	408	0.60
Transmembrane Helix	409	429	0.91
Non-Cytoplasmic	430	433	0.73
Transmembrane Helix	434	454	0.83
Cytoplasmic	455	462	0.67
Transmembrane Helix	463	483	0.92
Non-Cytoplasmic	484	488	0.75
Transmembrane Helix	489	508	0.87
Cytoplasmic	509	844	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTGAKVGQ GLAAALGIKL RNNEPYQDEV TRGESILSVQ TADTFVETRP TTKEFFQELV  60
   61 PSGKDVATYT RSLFPFLDWI GKYNLQWLLG DLVAGITIGA VVVPQGMAYA VLANLEPQFG 120
  121 LYSSFMGVLI YWFFATSKDI TIGPVAVMST LVGGIVIEMK EKFPEVPGHV VASALSIITG 180
  181 AIVLFLGLTR TGFIVDLISL TSLSAFMTGS AISIVIGQIP TMMGISGVST RDASYLVLIN 240
  241 TLKNLKTTKL DAAMGLSALA MLYIIRSACS FGAKKWPEKQ KLYFFLGTLR TVFVILLYTM 300
  301 ISWLVNMNHR SDPKFKILKD IPGGFQNAAV PVVETRVIGA MASNLPAAVI VLLIEHIAIS 360
  361 KSFGRVNNYS INPSQEMVAI GVTNLLAPFL GGYPSTGSFS RTAIKSKAGV RTPFAGVITA 420
  421 VVVLLAIYVL PPVFFYIPSA SLAAVIIHAV GDLITPPNTL YQFWCVSPLE VLIFFIGVII 480
  481 TVFSTIENGI YATVAISAAI LLGRILKARG RFLGPVRVHS VLDDRIIGDD HREYGTFGQT 540
  541 GTGTGGASTR NIFLPIDHGD GSNPDVEVES PYPGVFIYRF TEGFSYPNAS HTLEYLTRYV 600
  601 FAHTRRTNLT QYARPGDRPW NDPGPSKREL KRAQRSGGNL HIAGENPDLP TLKAIILDFS 660
  661 SVNHVDVSSV QQLIDVRNQL DRYAAPDPVD WHIACIGNRW TKRALVAGGF GYPTPRDEGS 720
  721 HRWKSIFSVA EIGGSDSAAA VAEKEEEQER RHAAASDADD LEKGVNVAPV HKATDGTETP 780
  781 RTEASSTETE RAAAASGAGL KGLRPAARAV TVHGLNRPLF HVDLTSALQS AIANIEARRG 840
  841 GDGL