YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38104157, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	107	0.97
Transmembrane Helix	108	128	0.86
Cytoplasmic	129	140	0.89
Transmembrane Helix	141	161	0.93
Non-Cytoplasmic	162	171	0.83
Transmembrane Helix	172	191	0.92
Cytoplasmic	192	221	0.97
Transmembrane Helix	222	241	0.94
Non-Cytoplasmic	242	248	0.79
Transmembrane Helix	249	270	0.89
Cytoplasmic	271	280	0.88
Transmembrane Helix	281	301	0.92
Non-Cytoplasmic	302	312	0.83
Transmembrane Helix	313	332	0.93
Cytoplasmic	333	347	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHGVRSILP LVLTACLFLG AANASVGDRL PEFRECVQVC LHENCEAGTL AHKVETPLIN  60
   61 RLLLWTCPAE CDYTCQHIIT SDRIESGQPV VQFHGKWPFY RVLGMQEPFS VIFSAGNLYA 120
  121 HLLGFRWLRR HIPESYPLRK YYVGFSFAGV ASWLFSIIFH TRDTRATEQL DYFAAGASVL 180
  181 YGLYLAVIRI FRLDRPGSTD GGKTPTGTAS SSSSISSSTP RAIRLWTAAC LVAYGCHVAY 240
  241 LKLVRWDYGY NMAANVCVGL AQNVLWSAFS YRKYTREGRT WATYPGLAVA WIMLAMSLEL 300
  301 FDFPPLWGAL DAHALWHLGT IAPAVLWYSF LVKDAQDDMA SAERFKD