YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9501225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.97
Transmembrane Helix	12	34	0.85
Non-Cytoplasmic	35	55	0.87
Transmembrane Helix	56	77	0.86
Cytoplasmic	78	92	0.84
Transmembrane Helix	93	114	0.89
Non-Cytoplasmic	115	121	0.64
Transmembrane Helix	122	144	0.90
Cytoplasmic	145	155	0.77
Transmembrane Helix	156	176	0.81
Non-Cytoplasmic	177	186	0.62
Transmembrane Helix	187	206	0.83
Cytoplasmic	207	225	0.81
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	258	0.80
Transmembrane Helix	259	280	0.89
Cytoplasmic	281	382	0.89
Transmembrane Helix	383	404	0.92
Non-Cytoplasmic	405	441	0.88
Transmembrane Helix	442	463	0.87
Cytoplasmic	464	534	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPPAANACQK AFVTNRVGDF GLLLGILGFY WITGSFEFRD LFEIFNNLIY NNEVNSPFVT  60
   61 LCAALLFAGA VAKSAQFPLH VWLPDAMEGP TPISALIHAA TMVAAGIFLV ARLLPLFILI 120
  121 PYIMNLISLI GIITVLLGAT LALAQKDIKR GLAYSTMSQL GYMMLALGMG SYRSALFHLI 180
  181 THAYSKALLF LGSGSVIHSM ETIVGYSPDK SQNMVLMGGL TKHVPITKTS FLLGTLSLCG 240
  241 IPPLACFWSK DEILNDSWLY SPIFAIIAWA TAGLTAFYMF RIYFLTFEGH LNCNFQNYSG 300
  301 SQNTPLYSIS LWGKGCSKRI NKSFPLLRMN NNESSSFFSK TTYRSDDNVR KRNRGRPFIN 360
  361 IINVVDFDNK KPYSYPYESD NTMLFPLLVL VLFTLFVGIL GIPFNQEGTD LDILSKWLAP 420
  421 SINLLHQKSK DSADWYEFFK DAIFSVSIAY FGIVLASFLY KPIYSSFKNF YLINFFVKIG 480
  481 PKRRYWDKIL NVLYDWSYNR AYIDAFYTTS FAGAIRGMAQ LTHFFDRRVI DGIT