YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39944792, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVNNVSHGH NDQANGDTDV SHRDQRAPDE YTRLLPNRLD SDATPRYLSP DDPAVTPYNL  60
   61 WSVRLMRWVT VIFTMLSFMW WVLQLVSIFV TPPGLQTRGS VFFAFGYATM SLGLLAVTLL 120
  121 FFAVPSKSVR ILSGVLAGLL LADTIIILAV RQLRHEEAFV GSTSVIWAFL MATWTLAADH 180
  181 TVQWGKREEE ERLTGRPETR RTLLEWTEVG IASIVIFVLC ITAGLMTCTL TIRAIDSSLE 240
  241 APGVKYWVDG DKYQIHVYCS GNKTDDKIPT VLIEGGGKPV EDGLWEFFEN AKENGTINRY 300
  301 CFADRPGYAW SDTAPSPLSA GMATEALSEA LARAGERGPW VLVGAGTGTL YSRIFSSRHG 360
  361 REVKGMMMID PAHEDLLHRT ADPGRGFALW AWGVLAPLGI DRIPGAILRG RSRSDRVWGR 420
  421 AVYQTEKYLF AKLQENLVAN SLTKRDVVSS RAIQYKNTPL VIVSSGVKIR KDSEWEGKQR 480
  481 DLCSLTRNLL SWDIAEKSPH EVWTTPEGRA LIEKRLRLLV RV

Type	Start	End	Confidence
Cytoplasmic	1	67	0.94
Transmembrane Helix	68	90	0.86
Non-Cytoplasmic	91	100	0.84
Transmembrane Helix	101	123	0.92
Cytoplasmic	124	130	0.79
Transmembrane Helix	131	150	0.94
Non-Cytoplasmic	151	157	0.77
Transmembrane Helix	158	178	0.88
Cytoplasmic	179	208	0.78
Transmembrane Helix	209	230	0.89
Non-Cytoplasmic	231	522	0.85