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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39944762, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPESDYLQ PGFDPRTLTI PRLRSIMVTY NIPFPSNAKK GELIELFNDH VAPQAHKILA  60
   61 KRERAKRSSM GITDAQMMHS ASMEDMDDFD EEPRARTTRS RSPRKTSRVK RESEEPERLM 120
  121 QSVERPLSPR KRSVRSVSRQ VPSDTETDGD NRLGVRATSR RSVTPAVKLE APVERRENLF 180
  181 ASPRRSDYNM LSEEEEADDG NPFTSDNPFQ SGSSPPAVKT PSNRRRTTGG SELSVSKNKS 240
  241 AQRRRTDGPV IQEPMSRKTS RTYEIPVSAL RRPRTLEHLT SVEPGEEFTP DEQLELAQEE 300
  301 AEHGVVARRE AGPPRSRSWA PFWVVIFMLL GVYGGWYRQE KIKVGYCGLG QQPTAILPPE 360
  361 VQEKLPEWAE ILVEPQCEAC PAHAYCYEDF SVRCEDDYLM VPHPLSLGGL VPLPPTCEPD 420
  421 GEKVRRVKAV VDKAVEELRE RRAQYECGTA AEKEEEKPVT PSIEEEVLKN ILSDKRSKKM 480
  481 GKQEFDDLWE AAIGDIKERD EVEEEEDKVL DSSGVSRTRL SSTSLARLPL TCSLRRTFRL 540
  541 GLERYRLYLC AVVVLILSGF WARFKYRRHV ATKAQVPRLV DMVLERLAAQ KELAYDTGED 600
  601 DPFLFLPNLR DDVLREKHSL AERERIWQRV RTVVEQNSNV RQGQREGRDG EVGRAWEWIG 660
  661 PTAGGGAIGS ASGARRRTLG GRVSFGAGLS DKDEHDSSAL VESPADRTAT HKKWREGGGR 720
  721 PAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle