YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39944296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	191	0.98
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	217	0.78
Transmembrane Helix	218	239	0.92
Cytoplasmic	240	249	0.89
Transmembrane Helix	250	271	0.93
Non-Cytoplasmic	272	280	0.77
Transmembrane Helix	281	304	0.90
Cytoplasmic	305	313	0.92
Transmembrane Helix	314	336	0.88
Non-Cytoplasmic	337	347	0.90
Transmembrane Helix	348	368	0.92
Cytoplasmic	369	454	0.96
Transmembrane Helix	455	477	0.90
Non-Cytoplasmic	478	492	0.87
Transmembrane Helix	493	515	0.83
Cytoplasmic	516	522	0.84
Transmembrane Helix	523	546	0.90
Non-Cytoplasmic	547	555	0.80
Transmembrane Helix	556	577	0.91
Cytoplasmic	578	583	0.87
Transmembrane Helix	584	606	0.88
Non-Cytoplasmic	607	611	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFNHFKIK RAANALSRKG SDSSFNPFAH IQWRKERSQT FPVDVERGEG AGGGRARRDD  60
   61 GEDDIDHSPI VHVSTAPVSG RGQNERATDQ ESIGAAPTAT NSEKQSQEPV DASRDDNKTL 120
  121 TGLSPESAEN GLRQRRPEPK LDTTVDGLAP SSSGAETGSD ADNGKQKKSS RFIKHVEPKE 180
  181 PFTIANQLQR TFLSSWINIL LFAAPAGIAL HFTSVSPIVI FVVNFIAIIP LASMLGFATE 240
  241 EIALRTGETL GGLINATFGN AVELIVAIIA LMEGEVVIVQ TSLIGSILSN LLLVLGMCFF 300
  301 FGGLRRREQF FNETVAQTAA SLLALAVAGV IVPTVFDRAS NTPDHDVALL SRGTAIILLF 360
  361 VYAGYLFFQL HTHQEVFGEE SQKVPAKPFR NHSPNPARNG IAAGLAGPGR GLIAQSISPS 420
  421 GEEGREKLSQ MLKEPGRVAA AAEEEDDSEE PQLHFFVALA LLAGCTVVIA FCAEFLVDSI 480
  481 DYVTSQGGIS KEFLGLILLP IVGNAAEHAT AVTVAIKDKM DLAIGVAIGS SMQVALFLIP 540
  541 LLVVIGWGKN MDAMGLSFDI FQVAVMFVAV LLVNYLISDG KSHWLEGMLL MCLYAIIAVC 600
  601 SWWYPTPQPT T