YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39944294, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	135	0.99
Transmembrane Helix	136	158	0.91
Non-Cytoplasmic	159	172	0.87
Transmembrane Helix	173	193	0.95
Cytoplasmic	194	202	0.82
Transmembrane Helix	203	222	0.95
Non-Cytoplasmic	223	232	0.69
Transmembrane Helix	233	254	0.89
Cytoplasmic	255	262	0.83
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	292	0.88
Transmembrane Helix	293	317	0.84
Cytoplasmic	318	361	0.94
Transmembrane Helix	362	387	0.83
Non-Cytoplasmic	388	404	0.83
Transmembrane Helix	405	426	0.94
Cytoplasmic	427	446	0.91
Transmembrane Helix	447	466	0.97
Non-Cytoplasmic	467	473	0.80
Transmembrane Helix	474	495	0.90
Cytoplasmic	496	514	0.83
Transmembrane Helix	515	533	0.91
Non-Cytoplasmic	534	539	0.89
Transmembrane Helix	540	562	0.91
Cytoplasmic	563	617	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKIDLKSS PEKGQAEENS VGSTQQHPTI SSANPKAESG TSLHRLSHAT PTSEHLPPTA  60
   61 NTHSPQQVGF DPQPAVTLPY RTLNSTANID EYVTEAPSGE IDGPPENDGS GRRYKLVTFL 120
  121 PDDPENPKNW SKAFKWYVTM VVALTCFVVA LASSVITADI AGVVEEFGVS EEVALLSITV 180
  181 FVIGFGIGPM IFAPLSEVYG RRIIYGSTLL VAVIFIIPCA VAQNIETLLV CRAIDGIAFS 240
  241 APMTLVGGTL ADLWRNEERG VPMAAFSAAP FIGPAIGPLV GGYLSDATGW RWLYWIQLIV 300
  301 SFVVWVLITF TVPETYAPTI LARRARQIRK KTGEQDHVTE QDLDLRPASE RLAIFLIRPF 360
  361 QLLFGELIVF LISIYMSVLY GLLYMFFVAF PIIYQEGKGY SAGTTGLMFI PCAVGVILSA 420
  421 FCAPFVNKNY MNQVRKHNGK PPAEVRLIPM MCSCWFIPIG LFIFAWTSYK ELSWAGPAMG 480
  481 GFSVGFGFIF LYNSANNYLV DSYQHQAASA LAAKTFIRSF WGAAVVLFTS QMYDRLGNQW 540
  541 ASTLLAFISV ACCAIPFLFW RYGARIRRRS KYAYAGDDDD DAQNDEKSSV DLEKGHNKDP 600
  601 ERDMEDLRRA QSYVSNP