YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39944280, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLEKNPSG PPRWVAELQS PMPPRTKSGN VADPPGFPSQ SGGNSKKRDA AIKDGSKPAT  60
   61 MQTPEEVDTL KVKKAWEVAL APIKSLPMTF FMMYMSGNSL QIFTIMTVFM AFKNPIVGIL 120
  121 GTAQAFERFE TESNRAQMLQ VKLAYVVMQI AALGLALWKV NAMGLLPTTR SDWLAWEAQR 180
  181 EPLEYALPAL

Type	Start	End	Confidence
Cytoplasmic	1	89	0.86
Transmembrane Helix	90	112	0.76
Non-Cytoplasmic	113	142	0.64
Transmembrane Helix	143	162	0.84
Cytoplasmic	163	190	0.65