YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38103696, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	162	0.90
Transmembrane Helix	163	186	0.81
Non-Cytoplasmic	187	197	0.54
Transmembrane Helix	198	217	0.80
Cytoplasmic	218	222	0.65
Transmembrane Helix	223	244	0.82
Non-Cytoplasmic	245	253	0.64
Transmembrane Helix	254	272	0.93
Cytoplasmic	273	279	0.54
Transmembrane Helix	280	302	0.84
Non-Cytoplasmic	303	332	0.73
Transmembrane Helix	333	353	0.76
Cytoplasmic	354	364	0.84
Transmembrane Helix	365	387	0.89
Non-Cytoplasmic	388	461	0.64
Transmembrane Helix	462	482	0.66
Cytoplasmic	483	493	0.76
Transmembrane Helix	494	515	0.83
Non-Cytoplasmic	516	518	0.52
Transmembrane Helix	519	539	0.68
Cytoplasmic	540	547	0.51
Transmembrane Helix	548	568	0.88
Non-Cytoplasmic	569	573	0.59
Transmembrane Helix	574	592	0.83
Cytoplasmic	593	894	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAQSSHCRL EADRPEHWHA TWLVSRAFFA SWYGDLRCSS AELVNTPPEV LARTGAADVD  60
   61 IAMLKLGGSR SAGVWCASFC TPGQSRPQAW GKMGSGRTAA RLVGIDVDRY SKERRTAVPG 120
  121 NLVGVSYYVE AEPTAKEALE QLIPTAAGVK RYFRSLFPFL SWIFHYNLTW LSGDLIAGIT 180
  181 VGFVVVPQGM AYALLAQLPP EFGLYTSFVG FLLYWAFATS KDITIGTVAV MSTIVGNVVI 240
  241 RVQSTQPDIP AEQIARCLAL LSGVVLLFLG LVRAGFIVEF ISLTAIASFM TGAAVSIAAG 300
  301 QVPTMMGISG VSSRDPTYLV IINTLKGLPR TKLDAAMGLS ALVMLYSIRS FCNFMARRQP 360
  361 RRQKMWFFIA TLRMAFVILL YILISFLVNR NVTKASDARF RILGTVPSGF QHVGAPVMTS 420
  421 KVLNAVAPDL PVTIIVLIIE HIAISKSFGR INNYIIDPSQ ELVAIGFSNV FGPFLGGYPA 480
  481 TGSFSRTAIK AKAGVRTPLA GIFTAAIVLL ALYVLTSVFF YIPSASLAAL IIHAVGDLIT 540
  541 PPNTVYQFWM TSPIEVVVFF AGVILTVFTN IENGIYLNMA ASAALLLFRI ARSPGRFMGH 600
  601 TRIYTTTSTA GASASELEAS GTGRDAYFDE ERRDNANPDL PIRQVHPGIF VYRFPDGFNY 660
  661 TNSAAHLDFI TMYVYKKTRR TVLDNNAKIG DRPWNDPGPR RGQMVTDDMA NRPILRAMVL 720
  721 DFSSINYADV TSVQALIDLR NQFAKHAAPS PVEWHFAGVT NRWTKRALVA AGFGFADTAA 780
  781 EADHSASSSR EKDYESDSGS RVPGSPNTPW APLFSVSVVD GSGNVEPRHE DGSRMAVDAE 840
  841 KGNGTAADGN GSAAGAASLG GSSLVPVYGL NRPFFHVDVA EAVQSALSSI ESNT