YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145014688, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERLWKFR RPQWLNSVWA RNAGVYTSGA LFSLAFYVLL DAAVWSKSPL NPSDTHVTFV  60
   61 DWLPFIFSSL GMLIINSVEK SRLGADSFSY SGSGVAWKAR VVLFLGFACL AGGMAGGVCV 120
  121 FVLGYVVPGL GMPQMFMGVE NVVANALVGL SSAVLWISQN MEDEYSYNLA L

Type	Start	End	Confidence
Cytoplasmic	1	17	0.98
Transmembrane Helix	18	40	0.92
Non-Cytoplasmic	41	57	0.91
Transmembrane Helix	58	78	0.90
Cytoplasmic	79	100	0.90
Transmembrane Helix	101	125	0.92
Non-Cytoplasmic	126	136	0.79
Transmembrane Helix	137	157	0.82
Cytoplasmic	158	171	0.83