YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38103481, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGSGSSSS SPTKARHQLR PPHPNGHLHR SSRPHSRTSS PNPPPSPRLH PLPPPLLLTI  60
   61 RFSNGLPDLH LDIQRPTTTP VIALKHLIRS RLEEPTSQRR LRFINAGRIL PDDAALSAVL 120
  121 KPLPALPPPP PPPASGKGKA VEGAAPAPPR VYVNCSIGDL LTDKELAAEA EAATVKMNTA 180
  181 PSSPTGPLSP SPFSSTGERT GLLLDASHGA GGQQQQQQQR GPRGFDRLLS AGFSHAEVNQ 240
  241 LRLQFRSIQS SRHTPDTMPS PDTLRSMEDA WMDNNQGTGG GGGGMGSYGG GGDADGLAGA 300
  301 DGGDEVGING FVDVMLRGML IGFVWPLGAF GWLVREEGLY SRRWKVFISF GCLLSLIIGL 360
  361 IRSISGEHA

Type	Start	End	Confidence
Non-Cytoplasmic	1	313	0.70
Transmembrane Helix	314	334	0.90
Cytoplasmic	335	343	0.83
Transmembrane Helix	344	365	0.90
Non-Cytoplasmic	366	369	0.81