YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39943818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLTLPSFT QAEVEAHNTN RSCYVTVGQN VYDVTDFLDA HPGGADLVLD YAGKDIGAIL  60
   61 KDEDSHTHTE AAYEILEESL VGFLKPDKSF SNGKANGNGA AKGSSSGVDT PELVDAQGRP 120
  121 VHPRTGMSCE EDLNKETDYT GDYKKHKFLD LNKPLLMQVF LGGFSKEFYL EQVHRPRHYK 180
  181 GGESAPLFGN FLEPLSKTAW WVIPIVWLPP VAYGTYLASQ GIESKLNLAA LWCSGIALWT 240
  241 IIEYILHRFL FHLDKYLPDN RFAITLHFLL HGVHHYLPMD KLRLVMPPTL FFVLAFPFWK 300
  301 LAHFLFWYNW HVGTAIFCGG IFGYICYDLT HYFLHHKNLP LWYKDLKKYH LEHHFLDYEN 360
  361 GFGVTSRFWD RVFGTEIVPL VKTK

Type	Start	End	Confidence
Cytoplasmic	1	197	0.53
Transmembrane Helix	198	219	0.82
Non-Cytoplasmic	220	227	0.45
Transmembrane Helix	228	247	0.93
Cytoplasmic	248	283	0.51
Transmembrane Helix	284	303	0.84
Non-Cytoplasmic	304	309	0.62
Transmembrane Helix	310	334	0.82
Cytoplasmic	335	384	0.88