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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38103453, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLRSKAYL TCFYCGRKTS TRNDGSVRRF ECPSCEATNY LDENGEITDP PLEATAPSGA  60
   61 TDDKPPTMRD LLASQPDNDV FCAECLKNQR LFTASLAQYL PGDPDDPEYE ARERNFYKFR 120
  121 NNLDRQYPQT CSKCEPKVLE RIAQAGYTAK TDHLRRMIDR SLKARTAEQA SATGPLGVLS 180
  181 AVGRYLWLAG FIMQGLWHFR MMHELAKTAD FPWLRSFGVR QLLGVLASLL SLLPEPEKVM 240
  241 KWSILSTAVS LWWNPFFLKT LTMHSLACIV MFYIAKLALS SIRVDTTPLF GSKSLPTPKS 300
  301 PEAAPQPSQR KSSGDTMFDM LDEVLVSPVP ARESDDETET QSLPPKIRPR FTEGPLRGQQ 360
  361 MSQGGGLFAP ENARGSTFGR QDDKLRTTEY ASEMDWQPTE LPPRAFNPFS APEQPLRSFN 420
  421 DAPVNDKHGP FWFKVPPAPA TSMAHRALSP STASSTALLQ SQPEPIQQRR FFASREEEAR 480
  481 KEQEVREERM RKEKERTKYI KSPSFRYRAN DPRDPLSDMF EDTFKISPTR AASAQQAAQK 540
  541 ADSAKEEVAA RQIKASDFSV LLLSALLLIP GYETFVPKEY GVHMALSTLQ VQGRHRSKAF 600
  601 AYTVAAALAL SEVGFITWTG LKAQDSVFNL GNSADCLKLV KVADVKTLHV GTGTIFRVLG 660
  661 NPSLAFGWHS SEFCQGIESS QVVGYLCSSI WGLPGANLFT WYAWPAFQGL TSFFSCKWPN 720
  721 FGPIKNRSLE NRRSARSSIE PGEQAKPDFE SQTQSKRNSI MEIESTQELE DCVGSTTSIQ 780
  781 SGCKLQKSLS MPALYASPYV WLDPMEPSSW GKDGYLKVMT GTGTAVKGTD FLQQLEAGLP 840
  841 GDSQKTSRPV NFGMIVPGVY RSGYPQQEHH AFMKDLKLKT VVTLVEKEPP EGFKPFLTSN 900
  901 NIKHHIIAMK GTKKESISLG TMQSILNVVL NPKNHPLLVH CNHGKHRTGC VAGVVRKVTG 960
  961 WETDAIIDEY RKFADPKERE CDIDYITMFD IADAKLSSMF ARKPLYAQVG PIGMVMLTIL1020
 1021 VLALFTLTMI KDNVATDWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle