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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39969013, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPTDASRQR EFVHPEAAHA RKKTPPSPFV LQPITAFYFF LAANLIAAVF APIQDCDETF  60
   61 NYWEPTHYLT HGYGLQTWEY SPEYSIRSWL YVSLHAIVAN IRRILPQSTK VSEFYFVRYV 120
  121 LGFICALAQT LLYRSISLTI SPRTGTWFVM VLVASPGNFH ASAAYLPSSF AMYACMLGAA 180
  181 AFIHWRGGLK TSHGIFWFAV AGVIGWPFAA ALCAPFLAEE GLLPLFGDGE RRFDCFVRVG 240
  241 RGVVAALLLV VFDTCINTFF YRKMEVISWN IVKYNVFSSS GGPNLYGTEP WTFYFKNLAL 300
  301 NFNIWFVLAM LSMPLFLMRN LIVPSGHELR SGWRTTVFLT PFYMWLGIFT AQPHKEERFM 360
  361 YPAYPFLALN AAVAFHIIVT ALGNANPKTL IGMIPGKLKL AVLSIAVLLA FDVSLARVYG 420
  421 VYTAYSAPLS LYKPLGTGVL GEQGLGGSGD SVCFGKEWYR FPSSFFLPRK MRAKFIRSEF 480
  481 RGLLPGEFSE ARTGFGIFGG TWLTPSGMND RNEEDMGNGQ RQLGGRTMYP ILGCSEYELP 540
  541 RPGALGPSAV LYTGSHAEKV GLSLSFAKTE GFIKKSNISA GLYIASLYDY WHHRTRNFGV 600
  601 MQENLLLMEL REQGAVVDFG SLHLGALKRI VTGGVAIPGD PGYEDAIRRW SALAVKQAGI 660
  661 VVFPTTAREV SGAIVYANGH SIPFTVCCGG HATSGSSSIG PDGMLIHLRL MQAISVDAQA 720
  721 RTVTFGGGCL WRQVDAATSE YGMATPGGTI SHTGVGGLIL GGGFGWLSGR YGLCIDNLLE 780
  781 VEVVLGDGRI VTANAASEPD LFWAMRGAGH SFGVATRFTS RLYPQGDVWG GLLEFPHERL 840
  841 AEVTAVVNEM INKGDEDQCL MVTSTYATSK DSKSTVRAKV TTVCCFYNGT AEKAEGEIFK 900
  901 PLLSLRPHTS TAKQLPYAEM NRVLDEFLTY GSMMRQGGTN VLPHLTAQVL CGAANKLFDW 960
  961 VDEMLRKSDG RVDARDSIIA WELIPFDKTA SVPGSATATG NRGRYYNVGM VVCNSSSDAS1020
 1021 QDDEMRAFKR ELSASIATAG FKADMVGHGG VGHYVNYAEE QLSAEAGFGG NAKRLRELKT1080
 1081 RYDPDNRFRK LWRLDTNV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle