YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494415
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIYYINMLV MSILLIVLFL SYNVNNHNKK YNVGYIQNNR QMIMMKSRRL AEIQLPKCPH  60
   61 YNNDPELKKI IDKLNEERIK KYIETNNSFE ELHGLLVKER TKSLYENGMK KSSNMEKELL 120
  121 KKYDDSIRDE HNVISKSGIY TSDYRKLYDK SCDYQNQKIL RDELASCCKV HDNYLDNLKK 180
  181 GCFGGVGICT LCSLLVSNIG IGYAVTAAKE VITGLYSLDI ANKFTKALAG IYFFFSSSIE 240
  241 NAGVSGVTIF YWDSMRMASI ASSTINPYGI AALVLIVLVV VLIVLYIWLY RRRKKSWKHE 300
  301 CKKHLST

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.72
Transmembrane Helix	5	24	0.76
Cytoplasmic	25	229	0.80
Transmembrane Helix	230	251	0.85
Non-Cytoplasmic	252	267	0.91
Transmembrane Helix	268	290	0.94
Cytoplasmic	291	307	0.98