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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38102618, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIQETVVP SGQHYSGAHR VPNIKQFMAS LDKEKQARDA KLEGAGEPKS HENMPVREIG  60
   61 KNRRTVRDPV TGNDVEITDI DSSLMKNARD PQLSVPNANL ARSTTVATSP NQTGEEYRRN 120
  121 QDVTAPPDPI EPGSTSDVPI HGEKTNVLFH PTPSVSYEPM FAAIEARANF LCGGIFFAII 180
  181 FLGRFFGASL WGLIPLAMCI SSGVFLWAKD LIRQGRDLEW SSEQKRGETA VVNLIPESVE 240
  241 WLNTVVGLIW NLINPEMFAA VADTLEDVMQ ASVPGVIEHV KVNDISQGTN PLRILSLRAL 300
  301 PDSHVQDLKD EIRKRDEKTK DPQELAADEE GGDFYNLEAT VAYHALPSSG DVSSKARNMG 360
  361 MQLIFYLGVR GLFGVPLPIW VELNGMVATV RLRVSLAPNP PFIKTLSFTL MGLPKVEASC 420
  421 VPLVEKGANI LNLPVISNFV NWAIATAANM YVAPKSMTLD IGKMLQGDSI KKETEALGVL 480
  481 FIRIHKATGL SKQDRRGSEG GGSDPYICIA FSKFGKPQYC TRVIQDDLNP VFSESAALLV 540
  541 TPEVIKADEQ LSLELWDSDR SSADDVVGKV ELSIQKLIQH PGKMFPQMSK LRGVKADSTM 600
  601 PGELHWEVGY FGKTQFRRAL MTDGKDPKLP KELRDKAELQ DDKGALETSE EEAVVRTPPD 660
  661 PLWPSGILSI VVHQIVNLEL ENVKGSNGKR KGREFEPARP EAGELKEEQS KKLPSSYCTI 720
  721 LLNDELVYKT RTKVVSSKPI FEAGTERFLR DWRSGIVTVT VRDSRNRQHD PIIGVVPLRL 780
  781 SDVLLTSSQS TRWYPLDGGI GFGRIRISLL FRSVELKLPP AQVGFGEIGT FEFLSDSIET 840
  841 VGGFAPSAKT RIHLRTGGSS ATVKSDRCSP LAGDANGLRW DLSNDKVRLP VRYRYRSPVF 900
  901 FEFVQSGKRK THHFAVFWLQ DLPDNEEKDF DIPVWECNNG TRLSQNYITE ENYKTIPDIH 960
  961 IKELGRVRFR GRFKPGTDRD HLKFVSDNDS RETIESWEAC FAEGVRTEEV VGEVPPLIQQ1020
 1021 LHEASLTQGR DVLAAAPESD KEKWMAKDGT DWSVAFGKDP VEMFGHRGDG KDGHSDAEDE1080
 1081 DEDGDSSTVD LGVTDASTED GSTGLSPMSS RGDSSQGVRE SMDSTISGGG ELQKTSSGSS1140
 1141 KNPIKQYKDY KGRSRDLHRK HRGLMQWRPM RNVQFAKNEA TFAARRIMKV GSLNGRKPDV1200
 1201 ETEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle