YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38102617, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESADADAA AARASEQARL RKERREAKIK AGGSARLNRI TGLGGGFQRD PIPTATASGT  60
   61 DAATTTASPT PAAAPTPDHA DPDEVDISSQ HFPSPRRQQQ QQQQPPSEMS EAQLRQLMLG 120
  121 MDMPRGDGSA PANPFAGNPF LNPGLGGPGG QPGGPEDPMM KMLQQMMGGQ MPGGGAGGFP 180
  181 GMPGAAPQQQ QQQQAPLDTY SAAWRILHLV VALGLGLYIA LTGAFMGTLE ARDAARLASD 240
  241 AGMSSADLDE SNNNRARFFY MFATAEAVLL TSRFFLDRSR APPPGILWTV AGFLPPSMKR 300
  301 YLETALRYGQ VFTTVRSDLL VYTGCSSNS

Type	Start	End	Confidence
Cytoplasmic	1	167	0.88
Transmembrane Helix	168	186	0.69
Non-Cytoplasmic	187	205	0.73
Transmembrane Helix	206	229	0.86
Cytoplasmic	230	329	0.72