YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39973805, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLVVKTPL HCFLLSFVLT VVAVLLASKA VDAAYSIGSD AAYADEIRAS ARTIAYDLMS  60
   61 YYSGNQSGQV PGILPGPPPK GDYYWWEGGA LMGAMIDYWH LTGDATYNDV VSQGMLHQVG 120
  121 DNRDYQPVNY TASLGNDDQA FWGMSAMLAA EVNFPNPPPD QPQWLSLAQA VFNTQAAPAR 180
  181 HDKTCGGGMR WQIPIANAGY NYKNSIANGC FFNMGARLAR YTGNSSYADW AETQWDWLQS 240
  241 VGFIDADYNI YDGETNCTDI NRALFSYTYG VMVLGAANMY NFTNGSAKWE ARVKGLLTAT 300
  301 FETFFLDDVI TEVACEPHDS CTTDMLSFKG YVHRWLTTAT TVAPFTRAQV LPILRKSAEA 360
  361 AVATCTGGKD GRQCGFKWST REFDGKTGAG QQMNVLGAVT SLLQKASQSA PLTNSTGGTS 420
  421 TGDPDAGTGP QIDVGGRFRA ITDGDRAGAS FLTIASAILF WVFFFWLLSG MGEEDANPDG 480
  481 AEEVRERRKK AKGVGLLRRL KGGYRGVYTG DDGGGDVDSK DENEKRGAAR LPLARGRLKR 540
  541 RAGDDRPKVK VPLLHNFWQP GSKE

Type	Start	End	Confidence
Signal Peptide	1	33	0.98
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	446	0.93
Transmembrane Helix	447	468	0.83
Cytoplasmic	469	564	0.72