YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1762146
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRSLPIK RAIHHPAPGI TPISPRIMVS RLRVIPSFNL KFNRWNSSVP ESSKKELKTT  60
   61 DGNQESASKV SPVKEKEKVP FKVKMQKALR HYWDGSKLLG LEIKISSKLL MKSAAGYPLT 120
  121 RRENLQLKRT TQDIVRLVPF AAFLIIPFAE LLLPFALKLF PNLLPSTYES SKKRENKLEN 180
  181 LRNTRKLMSE IIKNNKSHFK PNNISEEQKA LFNRFYTHVR ATGVPESRQQ LIEVARLFTD 240
  241 DTVLDNVTRP YLIALAKYMN LQPFRTDVML RYRIRYKMLE LKKDDLSIYY EDAEQLSLSE 300
  301 LKTACASRGI RSVDVEPSVL YSNLRLWLNM RLKDKIPSTL LIMATAYNYG NVQSKESLYD 360
  361 ALCDVLIGIP DELYHEVKVN VVKEDEASAK QKLKQLREQE EIMKEEEQQE ENAIVSVKDE 420
  421 LSLDDQDKNI DAAAPDVKLH DSKPIGEAAA IKEK

Type	Start	End	Confidence
Cytoplasmic	1	136	0.80
Transmembrane Helix	137	157	0.78
Non-Cytoplasmic	158	454	0.99