YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2388633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRAGSQRR RSDSGGEETD TEPESPRWDD RTAHWRNAAG FWILGLCNNF SYVVMLSAAH  60
   61 DILSHQGSPG NQSHVDPGPV PSPYNSSSRF DCNSVSTAAV LLADILPTLV IKLLAPLGLH 120
  121 LLPYSPRVLI SGVCSAGSFI LVAFSGSVGI SLCGVVLASI SSGLGEVTFL SLTAIYPRAV 180
  181 ISWWSSGTGG AGLLGALSYL GLTQAGLSPQ NTLLSMLGIP ALLLASYFLL LTTPESQDPG 240
  241 GGDEAETATR QPLLSSEAPE SRPDSSWNLS FQEKWTVFKG LLCYIIPLVL VYFAEYFINQ 300
  301 GLFELLFFRN TSLTHAQQYR WYQMLYQAGV FISRSSLRCC RIRFTWALAL LQCLNMAVLL 360
  361 ADIWLSFLPS IYLVFGVILY EGLLGGAAYV NTFHNIALET SDKHREFAMA AACISDTLG

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	60	0.85
Non-Cytoplasmic	61	96	0.88
Transmembrane Helix	97	116	0.75
Cytoplasmic	117	127	0.57
Transmembrane Helix	128	161	0.78
Non-Cytoplasmic	162	179	0.62
Transmembrane Helix	180	202	0.91
Cytoplasmic	203	211	0.63
Transmembrane Helix	212	231	0.95
Non-Cytoplasmic	232	274	0.71
Transmembrane Helix	275	299	0.80
Cytoplasmic	300	343	0.77
Transmembrane Helix	344	365	0.90
Non-Cytoplasmic	366	370	0.77
Transmembrane Helix	371	393	0.83
Cytoplasmic	394	419	0.88