YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38102296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTIAKIAAV VLGISFMTFV AFFGRLPMFR HTPVSWLHRL LWVYIPRGVL ALDQKLTSGK  60
   61 FGSSLMRFGR FMMNDRHPTV MIFFFLILAI SESAALPKAW SQLTTMQQII LATSVFLPYY 120
  121 TLYKAAYTDP GYITGDNHRA HMAAYPYDFT IFHPGSSCRT CGLLKPPRSK HCSICKHCIG 180
  181 RMDHHCIFIN SCVGAGNAHW FLLLLLSTAF LCLYGGVLCM SLIVRSIRRR APGFEVLWWR 240
  241 GNFGDGMDLN SYFVLWSWGI ADQVQLGAVG LLAILCSPLV WGLFGYNMWN VWGGVTTNES 300
  301 LKWSDLGEDM ADGIAFKRRI APGRLKDLRF EPAYTSWPVE AEQIVIRTND GQPPPVQGGG 360
  361 LEGDGEWERV WKLKNVENLY DLGFWDNLAD IFSPTKTSND SYMEIPHAED PGPRRGRRRV 420
  421 RD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	76	0.44
Transmembrane Helix	77	96	0.91
Cytoplasmic	97	103	0.36
Transmembrane Helix	104	122	0.47
Non-Cytoplasmic	123	199	0.83
Transmembrane Helix	200	224	0.87
Cytoplasmic	225	235	0.89
Transmembrane Helix	236	256	0.78
Non-Cytoplasmic	257	265	0.62
Transmembrane Helix	266	285	0.92
Cytoplasmic	286	422	0.90