YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39974375, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIARPLRQ VACRAGPTSL AQRTLANNVP RIAAFHASSR RNLLPPLPQK IQGTVNDPAP  60
   61 VPSPSPSHGH YHWTFERILA AGLVPLTVAP FAAGSFNPVM DAVLCSTLLL HSHLGLQNVI 120
  121 TDYLPQKRVP KSRKAAMWLL NLATAVVGVG LYEFETNDVG LTEGVRRIWT A

Type	Start	End	Confidence
Cytoplasmic	1	72	0.81
Transmembrane Helix	73	93	0.57
Non-Cytoplasmic	94	101	0.48
Transmembrane Helix	102	120	0.50
Cytoplasmic	121	134	0.76
Transmembrane Helix	135	154	0.76
Non-Cytoplasmic	155	171	0.91