YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145018608, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAKWIDWSK TTRSKDYRGS SSFATFMIIG PVCFFLGILF ASFPYDFPLL WTSDPVPPSY  60
   61 YDQLATHLRF MHAAPPLISR VLNIVVFVGF CGFFAKLFRP SEANVLFDGS SLVLYVIGVG 120
  121 IYLANIVKGL RDVTADVWGA DGKGTLNHEG PISGEVKLSR EDSLKVLSAS NTILALVLVG 180
  181 VLVLQAGEWY AERKEADDEE VREAGDKKTA ASKKKQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	76	0.93
Transmembrane Helix	77	98	0.89
Cytoplasmic	99	104	0.91
Transmembrane Helix	105	126	0.82
Non-Cytoplasmic	127	165	0.87
Transmembrane Helix	166	186	0.76
Cytoplasmic	187	216	0.79