YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39975179, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSPISRKR PNSTVSTPIS PSADSLHSPS SSRSSPSSSS SSRHPPYLPT RLETYVLALY  60
   61 PTLLVFGSAF ALLSPAVRAA KYDPYAQAHV QDSTAPSYFA RKDNVFNVLF VKRGWAWITG 120
  121 AFLTFVATHQ GITPTAAKAR AAVRWALVTG WWVLVTQWCF GPPLIDRGFR YTGGKCEAAQ 180
  181 AAVAEDGVAG SAAKDVFSAA ACRAAGGRWS GGHDISGHVF LLVLGSFFLV QEVGWVVIRW 240
  241 RARGWELRGK DTRTVVMVDG AVKSADVEAE DLWEKSLLGA QEGWLDVLGL GGKVALAVVG 300
  301 LSLWMLLMTA IFFHTWFEKL TGLLVAFTGL YGVYFVPRLI PGLRALVGMP GI

Type	Start	End	Confidence
Cytoplasmic	1	55	0.95
Transmembrane Helix	56	77	0.88
Non-Cytoplasmic	78	113	0.94
Transmembrane Helix	114	133	0.92
Cytoplasmic	134	140	0.91
Transmembrane Helix	141	161	0.89
Non-Cytoplasmic	162	216	0.95
Transmembrane Helix	217	238	0.94
Cytoplasmic	239	289	0.95
Transmembrane Helix	290	313	0.84
Non-Cytoplasmic	314	319	0.72
Transmembrane Helix	320	340	0.87
Cytoplasmic	341	352	0.84