YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2358269
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLHDHFWS CSCAHSARRR GPPRASTAGL PPKVGEMINV SVSGPSLLAA HGAPDADPAP  60
   61 RGRSAAMSGP EPGSPYPNTW HHRLLQRSLV LFSVGVVLTL VLNLLQIQRN VTLFPEEVIA 120
  121 TIFSSAWWVP PCCGTAAAVV GLLYPCIDSH LGEPHKFKRE WASVMRCIAG FGGINHASAK 180
  181 LDFANNVQLS LTLAALSLGL WWTFDRSRSG LGLGITIAFL ATLITQFLVY NGVYQYTSPD 240
  241 FLYIRSWLPC IFFSGGVTVG NIGRQLAMGV PEKPHSD

Type	Start	End	Confidence
Cytoplasmic	1	87	0.97
Transmembrane Helix	88	107	0.94
Non-Cytoplasmic	108	125	0.87
Transmembrane Helix	126	147	0.92
Cytoplasmic	148	161	0.88
Transmembrane Helix	162	179	0.87
Non-Cytoplasmic	180	185	0.75
Transmembrane Helix	186	204	0.89
Cytoplasmic	205	210	0.85
Transmembrane Helix	211	230	0.94
Non-Cytoplasmic	231	242	0.77
Transmembrane Helix	243	263	0.90
Cytoplasmic	264	277	0.87