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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39956388, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDRTWDDD PFTNSHPMRP RANTDGQYRS EGVNPLANNS WVFPQTLPDP PQASEEPRLV  60
   61 TEDLIAGPAA ADDTSTPNIQ AQEPPRWEPE NRQVDHVAQG REWNDLQDFN EIPATRAAEP 120
  121 APPPPPAGIV GSIANFMWHG VDATDLAEQP DLRHVHDGNG HVHPPDLDQP QGDDSDLDLD 180
  181 DDEDSDSEDE DDEDVGDAVG QNPLFAMAQQ QADAAADAAA IDPEAIDDAE DFEGVMELLG 240
  241 MRGPIGGLFQ NAVFCAFLVS VSVFVGIFLP YNLGRICVWI LANPMRPLNI LLSTVKFVQD 300
  301 FAMAVAGLLS WAGLRIAYMI LSGLEVLIPA MRRMGLSREY VMPVVRTTYY LARDSARRVS 360
  361 SSFAVDTSLI TTSEIRNFSA ISHEALISLK TNMAWSAMSI VNVAIFVFGG NYTTKAATTV 420
  421 SFVGNMTGAT VEILKGVPAV LTNPSSWVIN INPAGPSQPV SPALAHWSGT DRFWATLVGY 480
  481 LVVCLVAAIY LHHGRPLSSS QAGQEREASL IDALNQGSGV MKVILIIGIE MLIFPLYCGL 540
  541 LLDVALLPLF ENTTLKSRLL FTYNFPLTSL FVHWFVGTGY MFHFALFVSM CRKIMRKGVL 600
  601 YFIRDPDDAE FHPVRDVLER NVATQLRKIL FSAFVYGALV IVCLGGVVWG LWAFLPNVLP 660
  661 IHYSSNEPVL EFPIDLLFYN FLMPLALNFF KPSDGLHEMY TWWFRNIAAF PSGGGFSLEV 720
  721 DETGQVVPRT WKGLFDEGKS KPGPEITKEE MRAFNKQRAA LIESKQLIAD GRFVLTPASD 780
  781 QVKIPKGKQV FWEVSENEVG TETPSDEAAT GPPDLYTSKQ YQLVYVPPHF RARVFLFILS 840
  841 IWVFAAVTGV SFTIIPLIFG RHVFKMLIPT YIRTNDIYAF SIGVYILGTL AYGILHYESI 900
  901 CSKVKKRARA LAAAAAESSV TKKAMGLIAH GLRLIYTYTI VLIVFPLLVA SLMELYCLIP 960
  961 LDTYMYLAVY SGAVAGDPSA NKALQDAVTV NSSDDRHTVR VVQAWTIGLL YLKLGARIIR1020
 1021 VWRPDSRPAL AVRAVFRRGW LHPNVGVLTR AFLIPGLLFS GVAIMGPPAA ANAFMAYTGV1080
 1081 GVEDARMAIV VNRLSFPTAA LMALMGSVAW ATMDVFMSWR VRIRDEAYLI GERLHNFGSG1140
 1141 APQHNHHSAT QSGSVGAGAG RVAWREGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle