YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86196129, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMPSAPVT AAAAASRSKP AAAPAKPRSA VRQVLSLPPR LLHMYDDFII KNASQVSQIE  60
   61 SALRSLTYVI PGRFRDAEIA SESLHSGVGL LSLYHDLVLQ QRATSPSSPK LQQQPTSARP 120
  121 AHTRYTTFWF QKSPIYRRVA LALQVVQYTQ LLLEMAAKRR GDERLRWRVV VLVEAFKAFC 180
  181 KLVLLRITRG RPLLSPPVPE RQVLPEESED DLNGVPLELG DEQGEGQHEN GLLVNGNGNG 240
  241 AAKTNGHAHT NGKTIPNPSS PQKEWFMPRT QATLPSLPSN SDIGSYLLSR VLTADDIKPA 300
  301 PKLLRPLSGT ARAAEVLHIL APLVYALTLA HFSLRAAEKG ASGKKKSGVA TWTPWLLGVA 360
  361 LSLTARQLRD RGFGASALER EEWDRRGWGV GWWAMRGAAY EHVVKGMVEG VRRRMPSFVG 420
  421 GVLEDYEYLW DNYYFSTAD

Type	Start	End	Confidence
Signal Peptide	1	24	0.87
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	439	0.93