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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38100606, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQAVAKAA PAPMRAETPP IDKGGNKVAQ KPKNKPKSKS STDYTSEGVE DNDVFLLPIS  60
   61 DYQWMFAITA LAAAVRLFRI YQPTSVVFDE VHFGGFASKY IKGRFFMDVH PPLAKLLITL 120
  121 AGWLAGFDGN FDFKEIGKDY LEPKVPYVAM RMFPAICGIL LAPTMFLTLK ALGCRTIIAS 180
  181 MGAGLIIFEN GLLTQARLIL LDSPLMITTA FSVLAFVSFT NQHEQGPSKA FGPSWWFWLA 240
  241 MTGLGLGANF SVKWVGLFTI AWVGALTLVQ LWVLLGDTKN VTMKTFYKHF LARAVCLIMI 300
  301 PAGVYMGMFA IHFLCLVNPG EGDGFMSSEF QSTLNSKGMQ DVPADVLMGS RVAIRHLNTQ 360
  361 GGYLHSHPLM YPTGSKQQQI TLYPHKDENN LWFLENQTQP VDANGVQING TNAWDKVTPL 420
  421 PYIQDGAVIR IYHIATHRRL HSHDVRPPVT EAEWQNEVSA YGYEGFDGDA NDFFRVEIVK 480
  481 KKSAKGAAQD RLRTLETKFR LVHVMTGCVL FSHKVKLPEW ASEQQEVTCA RGGTLPNSLW 540
  541 YIESNEHAQL NETAERVNYR NPGFLGKFIE LNTVMWKTNA GLVESHAWDS RPDSWPLLKR 600
  601 GINFWGKERR QIYLIGNPVV WWSSTLAVVI YAVFKGIAVL RWQRNYKDYN NVVFKRFDYE 660
  661 IGSSVLGWAL HYFPFYLMQR QLFLHHYFPA LYFAIMAWCQ VMDFSLSRFR GFGIRENPII 720
  721 VRAAAVGFLA ISIVAFLLLS PLAYGNTWTR PECQRVKLLS GWDFDCNAFP DTYEAYQITT 780
  781 PQNPVVAQTP QQSVNAQPPP PQMKPKEDGG EKKDINQDQQ QAVISGAPNP ALAVDNSEVL 840
  841 PGGQRVLSRE ERVEYRDDKG NLLNEEQVKA LQGKVEFKTR YETRTRVVDD QGNEILNAVI 900
  901 PPQAEEPKQP VVEAPPAPKN DGPKDPVNPA GVAPPHPDVE GADKSTKQPV KDVAAESLVK 960
  961 DETLSQDGTK EKEQSKAKPA SENNEATGAS SAAAPAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle