YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86196638, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVASVQDRT AEFKSVLAQA QKRQANAKAS AQRRSLLTDA QKADANGAPP RRSEFARRAA  60
   61 EIGRGIAATM GKLEKLAQLA KRKTLFDDRP VEINELTFII KQDLSSLNQQ ISGLQQLSRQ 120
  121 QHPKADQEGE HNKNVVFLLQ GKLTDVSANF KDVLEVRTKN IQASRSRTEN FISSVSQHAQ 180
  181 QPVLQSSASP LYGTPNRGTP SPGVDLLTLN PPGGKGMGGG PVGDEQLMLM EEAQPQNAYI 240
  241 QQRGEAIEAI EKTIAELGGI FGQLAGMVSE QSEMIQRIDA NTEDVVDNVE GAQRELLKYW 300
  301 SRVSGNRMLI AKMFGVLMIF FLLWVLIAG

Type	Start	End	Confidence
Cytoplasmic	1	307	0.88
Transmembrane Helix	308	328	0.94
Non-Cytoplasmic	329	329	0.88