YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39970859, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRLPVQAS SWRPVAESVS SHLSSPAAST IIPSIPSSAQ RCPSNARAFS ATAPASGRLG  60
   61 RRQMRQWMKQ NEHKYKALER RPFEGSQYLS GNSSQPFPLN PHFRSAPVLS ESARELVWEK 120
  121 VMVKGEPMKS VSAELGIDIR RIGAVVRLKE VEKDWIANPP RRLNKQNKPL ARPYAKAFMA 180
  181 LLPQTRYDDS NSQRIHEQFN EVVVHPYTQQ QLFFPVSESR EFNREDAAKA FNRYLKSTDE 240
  241 RIPHPELVQM ERQINVEGVA PLEAAKAFRQ ATAEAEQKIA ERAERAARKE ASLITRVNDK 300
  301 RGVEFRFKDY NVDSVGHNGR GLEGVGVRYG VASYDRKRGE VKIPTKVE

Type	Start	End	Confidence
Signal Peptide	1	39	0.51
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	348	0.99