YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39970505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.92
Transmembrane Helix	57	81	0.79
Non-Cytoplasmic	82	90	0.63
Transmembrane Helix	91	108	0.72
Cytoplasmic	109	124	0.79
Transmembrane Helix	125	144	0.93
Non-Cytoplasmic	145	161	0.80
Transmembrane Helix	162	185	0.83
Cytoplasmic	186	195	0.68
Transmembrane Helix	196	218	0.80
Non-Cytoplasmic	219	239	0.91
Transmembrane Helix	240	261	0.89
Cytoplasmic	262	353	0.89
Transmembrane Helix	354	376	0.88
Non-Cytoplasmic	377	388	0.72
Transmembrane Helix	389	410	0.86
Cytoplasmic	411	418	0.78
Transmembrane Helix	419	441	0.82
Non-Cytoplasmic	442	501	0.88
Transmembrane Helix	502	525	0.85
Cytoplasmic	526	545	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNAEYRRK PGPQGSEVVT ANLIARENFS LDEPVPKTPA LNNHGFFELP LVDQRNFGLL  60
   61 VLLYFMQGVP MGLATGSVPF LLKDHMSYSE IGVFSLASYP YSLKLLWSPI VDAIWSPRVG 120
  121 RRKSWILPIQ ILSGLGMLLL GSTVENMMAM TGKPGGPTVW GFTGWWFFLV LMCATQDIAV 180
  181 DGWALTLLTP GNISYASTAQ TVGLTAGQFL SYTVFLAFNS KDFANKWVRT TPLDHGLLSL 240
  241 GGYLNFWGWT FILVTIGLAV LKREDRTRNE DGVWDVYRIM VGVLKLKHVQ SIIAVHLIAK 300
  301 VGFQANDAVT NLKLLDKGFG TDNMALTVLI DFPFEIGLGY YAGKWSQEYT PMRLWCWAFV 360
  361 GRLIAALAAQ FTVYIFPAGG VTPWYMLVVI AEHIFSTFTN TVMFVAVSAF HAKISDPIIG 420
  421 GTYMTLLATV CNLGGTFPRL FVLKAVDAFT AATCHPPSSL LDQDTKKLKG PLVTQPFSCA 480
  481 VQAEKERCLA GGGICEMTRD GYNIVNLLCV GFGIVTFVMF IRPRVMQLQA LPLRAWRLSS 540
  541 MNSRS