YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39941964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQVPVQTI HRDPQLFYWI LGPITVVMIL TGMLRHYAAV LMAVAPKKVD AKAMREQRSL  60
   61 LHGINVRSNY HVLSKRSFNT RRDTLSSAYE SGAFLKAPES RGQAPPNPMT DPNAMEGMMG 120
  121 MMKNNMAMIV PNTLIMSWIN AFFSGYVIMK LPFPLTVKFK SMLQAGVATR DMDPRWMSSI 180
  181 SWYFLCIFGL QFVFNFLLGS DNAANQMAQQ MGQMGPQAPQ MFGPGVDPDK QFLAEAENLA 240
  241 VIEHYSVLDD VEDRLLERLG A

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.81
Transmembrane Helix	16	38	0.89
Cytoplasmic	39	127	0.81
Transmembrane Helix	128	149	0.89
Non-Cytoplasmic	150	179	0.78
Transmembrane Helix	180	199	0.94
Cytoplasmic	200	261	0.81