YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39965325, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSVASGLP LSTSTNPQAK PPTDATTTAA SIPNLKDRLP KLEPRRRRPA PSNPVPVPET  60
   61 PNLPPPTGTS PETQFRVPTR RILSKKDHDL FVAAPAYKLI LAFVFGLSDA VVDKPISAIK 120
  121 DSDLSPAVQT INALLDEASE LVKQSPPDEQ GGSRFGNKRF RDFLDNVKER APSWHKKLGI 180
  181 KDEGDAIAEA VTYLGQSFGN RMRIDYGSGH ELNFLMWLLC LYQLGVVTKS DFAALVLRVF 240
  241 VKYLQVMRLV QSTYYLEPAG SHGVWGLDDY QFLPFLFGAS QLLHHPFITP LAIHQQLTIE 300
  301 EFGHDYLYLD QVNFVNSTKT VQGLRWHSPM LDDISAAKSW SKVEGGMRRM FVAEVLNKLP 360
  361 VMQHFLFGSL IPAAEGMTEQ DLAGLQPEDE ETEGGQVEVF NDEGGVRHMH QQNGWGECCG 420
  421 IKVPSSVAAA AEMRKRGIGG DSLRRIPFD

Type	Start	End	Confidence
Signal Peptide	1	17	0.75
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	449	0.98