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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38099164, gi|...
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPGTAGPFL CPVCPRRHSE IGCSCSAGAV SGRVTSVAVN LRKRGGDPLV LIRCTKAPRP  60
   61 IWRTIKAGGR ASAMADQISS PTKAAPSATA PPPKATAAIP VGLNEAALDS PSFRAAAIHF 120
  121 GDQVDAIKRW LESYSRAASR LAQDVASLEE SINSYLANAS PAPGTADGVI DTDFTLLALK 180
  181 RVGELSRERW TKILSSARNI DAMSTDPIRS FLNSELNAFN KAKRELESSQ RSFDAVLARH 240
  241 VAQSKTKEPS ALREDAFALY ETRKTYLKAS MDFCQLAPQL RYTLDKLLVK ISADMWKEMK 300
  301 KSDPASVIAG KYSEEMDRLR GWSRDLEDSE AALKRELQAA RREVSEPTLA GFKPSRELED 360
  361 YSVSTVPYIG SRGPVNLRSG DNASFVSEKQ GWLFTRSVPG KQNPKVMWFR RWYYCREGIF 420
  421 GWLVPSPQGV LQGEEIGLLL CSAKPAVQEE RRFCFEVKTK TQNLMLQAET QADLIEWLEV 480
  481 FEVAKKQAFE ATLGRDNSSL PGGVDPAFSI TQPVAPEFAA KSIDAMALDD NAGNPERSST 540
  541 MTVPPNPEVG VAPRPSVDVS TMTAPRRAIT SLAREEGESN REHASRLMQR LDLHRKALTS 600
  601 GTDQGGPQPS GGIAGLISAS HNLLPANYAV VTPHLVSSRP QTAMVPTTPS RPKALAPATL 660
  661 ARPPTATGLS KHAVVAFSEI GVGQGAGQIM PTALRANYWG SSFWGAMYCT GGDVPVPSTP 720
  721 SIFEDDPFGP PIKVQSPTGT VQQLRTPSSL HRKTLSDSVG GDRAVVIDPS KGDTGETFPP 780
  781 KYPSELKPHH AQFRMLFPSV PIAEKLALVF NATWSSSSED GSRNQTLIGG GRVYVTPDNM 840
  841 YFYGHHMGLV TAYKVRLDAI TEVTAAPGKE NDFIFLHLGQ DMNAKGFTRI TIKIFLEDLA 900
  901 LLQTRLNLLI DDLQAEEPMD LSSLVQTLVD LEKEDLGRKS LSMESWEEIP SHTPADDGTY 960
  961 AGRAPDRAAG LRPQRDKEKQ MAKFVLPAHA VIYEPEDMQQ LVAERHYDIS AKACFHILFG1020
 1021 DKSFIFPKLY FERRAKEISQ GPWQLAENGK MQRQFRFKVD YRDVLGRRKP ADVEDTQTVE1080
 1081 VFSDHITYVV KHVKTPWHLP HSQAFKLVTK TVITHLAKSK CKLAIYTKVD WSKPPTFSKR1140
 1141 LVQRQAMDDV ERDAEELAEV ATDQVRRLGP HSRTKRAIQV YGHIGHQTQV VIFTPGENNA1200
 1201 AKKPQIKPRT LTHMVWETLR SFAESVASSL MMWTFAILRR LFNIFSANRI ILAVLAVSVV1260
 1261 TNLMFTSIET STWWAERNAA KFMQRLGIGP NVMMSKAIYV YDLDQATESS FIAGVTKNPP1320
 1321 NSKCYSTFRD ILNSTDMDAP YQDAGANMSS RSSKLAARRI RRTRQRLGSY RHDLVVAMRV1380
 1381 VNSIEREMIQ SEWENWLMDE NMRCEQVRVM LNDESKDRTP YREDSQHRMT RPIDEHRVQS1440
 1441 LREWHEEYCG SCRADHEAIF VEQKSPVTLT 

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