YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39954014, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFWNSITG NKPEPKPSSE APTQQHTSAP ASTQNPLFDS SQPQGVDAFL GSSAFTDPSA  60
   61 LHPLAGLNKD ALEYITLEDS TLSDLPGSQS VIPSRGWSDD LCYGTGITYL AALGVGGAWG 120
  121 AQEGLRRSVG QPPKLRLNSV LNAVTRRGPF LGNSGGVVAI VYNLANSYFG YLRGKHDAAN 180
  181 SIAAGTLSGM LFKSTRGLRP MMVSGAIVGS VAGVWAVARK TFEKGSEEEI AH

Type	Start	End	Confidence
Cytoplasmic	1	148	0.63
Transmembrane Helix	149	165	0.57
Non-Cytoplasmic	166	196	0.53
Transmembrane Helix	197	218	0.81
Cytoplasmic	219	232	0.54