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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39953807, gi|...
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQPLFRNSS SARTELFAKV GRPIISKLVM RPSAAPSQAN QLLQLTDRLY SILNGQVSYD  60
   61 ASAVDAKIAE YVFFPLSFVF KNKEDHSARV LENAIKCLRI LIQYGWRSTI STSLTQQLLI 120
  121 LLTFIIAGVP GQQRTSPPPE ETVLECYRSL AVLIREACLS SSVSESLVDS SGLPSLGHTV 180
  181 TVILDGSTDG MTADIQLAAL DALRTLFVSM KDRAALASFL PGSVSTLSKL LSPPASLKLQ 240
  241 KRVLCYGARV FGDVLTRVLG DIHNRDALRQ LTSDTTGEGK DGELSGTELS ASWLKATSAQ 300
  301 VRMALAMVLK LRSHESDNVR NAVERLALSL LDECHASLAD CTVFLVETAI FTWKEEDDST 360
  361 DLSGGPKHTA SSIRDSALPE SVAVQTTLQD LAMIYPELQD AIKTVVHNMI TSMPRIMQTS 420
  421 DEKIKQQCIF ALSRGQRIVK VLNIDSSLLH EALSSALRDS IVALTSSKKQ LNVVADAEFE 480
  481 GEMSVNPTDL VTRPGETRTF KPIMLAHGSQ AGTRDAFLRL VSGIGSPSQQ ADLATDMISL 540
  541 ARDLSGIDQV TALWLAFELL KVALAKNEQD EQFFDFSGTM STNEPTEVFQ ELYQLSVLML 600
  601 TSHTDSLEVD WRLEAIAIEV TTFAASQMGV SFRPELIDTL YPIATYLGSQ NTQLRLHAMT 660
  661 ALGLIASACG YQDVSELIVD NADYMVNSVS LRLTSMDVTP ASLQVLRMMV RLTGPKLLPF 720
  721 LDDTVAAIFA ALDNYHGYPA FVERLFSVLS EVVQQGVKSD VLLLESKESK SLDHRKRSMA 780
  781 AATINDIESE VKERIAKKQK RRKEKEDLLP GVRAKHPQKP WTSEAKQLLD ERERKMKADD 840
  841 EEKAEDTGSG GEVEKPKPVR TPTYELLSRV TTLTQYYLTS PTPTLRKSLL DLLSTITPSM 900
  901 ALDEDAFLPM VNSLWPVVIS RLRDGEPFVV AAACRAIAAL AQGSGDFLAS RIKTEWWDSM 960
  961 SRWCQKAKQN AKTGATGNGG RSGKSNNSVP IHSGRNIGRL NMALVGNEVV LPHRPQGSSR1020
 1021 PGSGGVDTEK YSDGGLGRFA QASQVWEATV DMLVALVSFV RLDDEVFDQI LELLADELES1080
 1081 NSVARKALEV VNADAVWLAR FERGSLTQDL SVPVMDGIRF AALA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle