YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38099109, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.79
Transmembrane Helix	10	30	0.86
Non-Cytoplasmic	31	426	0.88
Transmembrane Helix	427	447	0.69
Cytoplasmic	448	455	0.54
Transmembrane Helix	456	473	0.66
Non-Cytoplasmic	474	478	0.71
Transmembrane Helix	479	498	0.67
Cytoplasmic	499	502	0.58
Transmembrane Helix	503	523	0.84
Non-Cytoplasmic	524	539	0.62
Transmembrane Helix	540	561	0.88
Cytoplasmic	562	572	0.55
Transmembrane Helix	573	594	0.75
Non-Cytoplasmic	595	622	0.50
Transmembrane Helix	623	645	0.84
Cytoplasmic	646	698	0.44
Transmembrane Helix	699	719	0.75
Non-Cytoplasmic	720	734	0.73
Transmembrane Helix	735	756	0.91
Cytoplasmic	757	776	0.76
Transmembrane Helix	777	798	0.92
Non-Cytoplasmic	799	818	0.70
Transmembrane Helix	819	839	0.92
Cytoplasmic	840	840	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPNREGLRL ATVLLTAANI VIPIAILTFA KGFFPYKPSL PGLSKYEDVE LGLGPPPDAP  60
   61 FDRLIRNGNA IPFTAHATSP TVTMPRIKAI TTGSIPSFLD VILNINEGDE SSSLASQDTW 120
  121 LAQMKAKATG KLVMHGDDTW LKLFPDTFDR ADGTSSFFVA DFTEVDNNVT RHITPELNNE 180
  181 DWNTLVLHYL GLDHIGHKGG PRSPYMLPKQ REMDHVVKEI YSAIESQPAL QSTVLVVCGD 240
  241 HGMNDAGNHG ASSPGETSPA LVFMSPKFKA LQNSYTAPMP YEEDFSYYNV VEQSDLAPTL 300
  301 GALLGFPVPR NNLGALIPDF LPFWPSRRDK TQLLLRNARQ ILGIVEATYG DKLFTSSLPD 360
  361 EICVHGKSAM GVLACEWKKI LETAGDEVTS DREFDAEWVP RTVAWLREAQ GIMSSMASNY 420
  421 DMQKLKLGQS MSVGAIGLTL GVPYLLGDEP RSYIPLSLIR GLYSIMMFAS SYVEEEHHFW 480
  481 YWFTTAWLAY IGFRRLYFGS ARLSAGEIVS IIVGLLAMRL LRSWNQTGQK FAGDPDIVKI 540
  541 FLKPSPTLLW TLILVTYFWI YRELLRGFSG LPTPINITGT TTIVLAALSF KLAFTYEESP 600
  601 EIVPGFAQTL LKFTAGASLL NRARAVFFGL AVGATWVIFS MVTKLGRSNK ATGSATLHHL 660
  661 FTLFAMTQSR ATNVPLFLIL DVIFKFISSQ PLTPEELSTT TLLLQFATFF AFGGTNSISS 720
  721 VDLSSAYNGI SDFNVVAVGI LTFVGNWAGA VYWTFATNTL LLRKTKAGAD LVFSRHVTVL 780
  781 TMFTAASVGA IMVACTVMRT HLFIWTVFSP KYLYCMAWTF GQHLVVNVGL GGLLYWLCLL 840
  841